PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005902P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Dof
Protein Properties Length: 275aa    MW: 29414.9 Da    PI: 8.8059
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005902P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.92.9e-4052112262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     ke+alkcprC+s+ntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rknk+ss
  MELO3C005902P1  52 KEQALKCPRCNSSNTKFCYYNNYSLSQPRYFCKACRRYWTEGGSLRNVPVGGGSRKNKRSS 112
                     6899******************************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-2846110IPR003851Zinc finger, Dof-type
PfamPF027014.3E-3454110IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.33956110IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105894IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDTAHWPQFA GGGGVVVKQM EGGGGSSSSC SKPNSGNGNG NNLLERKVRG EKEQALKCPR  60
CNSSNTKFCY YNNYSLSQPR YFCKACRRYW TEGGSLRNVP VGGGSRKNKR SSLSSSSTSS  120
DHNKKINASH QIINHQDLNL AIFPPNNNNN NNNTSISTSS SSSHLLASFM TAPATGMFNS  180
SGGFGLNELK PPASLSFSLE GFDQNGVRGY GDLHHHHHQD QTAVMFPIED MKQSNDHEDN  240
RGGLGGDNNN NTNSNNNSGG STGFWNGMLG GGSW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437630.10.0PREDICTED: dof zinc finger protein DOF4.6-like
TrEMBLA0A0A0KJS31e-120A0A0A0KJS3_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.11e-40Dof family protein